Everything

All Classes

rdkit.Chem.rdchem._ROAtomSeq

rdkit.Chem.rdchem._ROBondSeq

rdkit.Chem.rdchem._listPN5RDKit4AtomE

rdkit.Chem.rdchem._listPN5RDKit4BondE

rdkit.Chem.rdfragcatalog.FragCatGenerator
rdkit.Chem.rdfragcatalog.FragCatParams
rdkit.Chem.rdfragcatalog.FragCatalog
rdkit.Chem.rdfragcatalog.FragFPGenerator
rdkit.Chem.rdmolfiles.ForwardSDMolSupplier
rdkit.Chem.rdmolfiles.SDMolSupplier
rdkit.Chem.rdmolfiles.SDWriter
rdkit.Chem.rdmolfiles.SmilesMolSupplier
rdkit.Chem.rdmolfiles.SmilesWriter
rdkit.Chem.rdmolfiles.TDTMolSupplier
rdkit.Chem.rdmolfiles.TDTWriter
rdkit.DataStructs.BitEnsemble.BitEnsemble
rdkit.DataStructs.BitVect.BitVect
rdkit.DataStructs.BitVect.SparseBitVect
rdkit.DataStructs.HierarchyVis.VisOpts
rdkit.DataStructs.LazySignature.LazySig
rdkit.DataStructs.SparseIntVect.pySparseIntVect
rdkit.DataStructs.TopNContainer.TopNContainer
rdkit.DataStructs.VectCollection.VectCollection
rdkit.DataStructs.cDataStructs.DiscreteValueType
rdkit.DataStructs.cDataStructs.DiscreteValueVect
rdkit.DataStructs.cDataStructs.ExplicitBitVect
rdkit.DataStructs.cDataStructs.IntSparseIntVect
rdkit.DataStructs.cDataStructs.LongSparseIntVect
rdkit.DataStructs.cDataStructs.SparseBitVect
rdkit.DataStructs.cDataStructs.UIntSparseIntVect
rdkit.DataStructs.cDataStructs.ULongSparseIntVect
rdkit.Dbase.DbConnection.DbConnect
rdkit.Dbase.DbConnection.DbError
rdkit.Dbase.DbReport.CDXImageTransformer
rdkit.Dbase.DbReport.CactvsImageTransformer
rdkit.Dbase.DbReport.RDImageTransformer
rdkit.Dbase.DbReport.ReportLabImageTransformer
rdkit.Dbase.DbResultSet.DbResultBase
rdkit.Dbase.DbResultSet.DbResultSet
rdkit.Dbase.DbResultSet.RandomAccessDbResultSet
rdkit.Dbase.Pubmed.Records.JournalArticleRecord
rdkit.Dbase.Pubmed.Records.LinkRecord
rdkit.Dbase.Pubmed.Records.Record
rdkit.Dbase.Pubmed.Records.SummaryRecord
rdkit.ForceField.rdForceField.ForceField
rdkit.Geometry.rdGeometry.Point2D
rdkit.Geometry.rdGeometry.Point3D
rdkit.Geometry.rdGeometry.PointND
rdkit.Geometry.rdGeometry.UniformGrid3D_
rdkit.Logger.Logger.Callable
rdkit.Logger.Logger.Logger
rdkit.Logger.demo.Foo
rdkit.ML.Cluster.ClusterVis.ClusterRenderer
rdkit.ML.Cluster.ClusterVis.VisOpts
rdkit.ML.Cluster.Clusters.Cluster
rdkit.ML.Composite.BayesComposite.BayesComposite
rdkit.ML.Composite.Composite.Composite
rdkit.ML.Composite.CompositeCOM.CompositeServer
rdkit.ML.CompositeRun.CompositeRun
rdkit.ML.Data.MLData.MLDataSet
rdkit.ML.Data.MLData.MLQuantDataSet
rdkit.ML.DecTree.DecTree.DecTreeNode
rdkit.ML.DecTree.Forest.Forest
rdkit.ML.DecTree.QuantTree.QuantTreeNode
rdkit.ML.DecTree.SigTree.SigTreeNode
rdkit.ML.DecTree.Tree.TreeNode
rdkit.ML.DecTree.TreeVis.VisOpts
rdkit.ML.Descriptors.CompoundDescriptors.CompoundDescriptorCalculator
rdkit.ML.Descriptors.Descriptors.DescriptorCalculator
rdkit.ML.Descriptors.DescriptorsCOM.DescriptorServer
rdkit.ML.Descriptors.MoleculeDescriptors.MolecularDescriptorCalculator
rdkit.ML.InfoTheory.BitClusterer.BitClusterer
rdkit.ML.InfoTheory.rdInfoTheory.BitCorrMatGenerator
rdkit.ML.InfoTheory.rdInfoTheory.InfoBitRanker
rdkit.ML.InfoTheory.rdInfoTheory.InfoType
rdkit.ML.KNN.KNNClassificationModel.KNNClassificationModel
rdkit.ML.KNN.KNNModel.KNNModel
rdkit.ML.KNN.KNNRegressionModel.KNNRegressionModel
rdkit.ML.ModelPackage.Packager.ClassificationError
rdkit.ML.ModelPackage.Packager.DescriptorCalculationError
rdkit.ML.ModelPackage.Packager.ModelPackage
rdkit.ML.NaiveBayes.ClassificationModel.NaiveBayesClassifier
rdkit.ML.Neural.ActFuncs.ActFunc
rdkit.ML.Neural.ActFuncs.Sigmoid
rdkit.ML.Neural.ActFuncs.TanH
rdkit.ML.Neural.NetNode.NetNode
rdkit.ML.Neural.Network.Network
rdkit.ML.Neural.Trainers.BackProp
rdkit.ML.Neural.Trainers.Trainer
rdkit.ML.files.ReFile
rdkit.SimDivFilters.SimilarityPickers.GenericPicker
rdkit.SimDivFilters.SimilarityPickers.SpreadPicker
rdkit.SimDivFilters.SimilarityPickers.TopNOverallPicker
rdkit.SimDivFilters.rdSimDivPickers.ClusterMethod
rdkit.SimDivFilters.rdSimDivPickers.HierarchicalClusterPicker
rdkit.SimDivFilters.rdSimDivPickers.MaxMinPicker
rdkit.VLib.Filter.FilterNode

rdkit.VLib.Node.VLibNode

rdkit.VLib.NodeLib.DbMolSupply.DbMolSupplyNode

rdkit.VLib.NodeLib.DbPickleSupplier.DbPickleSupplyNode

rdkit.VLib.NodeLib.DbPickleSupplier._lazyDataSeq

rdkit.VLib.NodeLib.SDSupply.SDSupplyNode

rdkit.VLib.NodeLib.SmartsMolFilter.SmartsFilter

rdkit.VLib.NodeLib.SmartsRemover.SmartsRemover

rdkit.VLib.NodeLib.SmilesDupeFilter.DupeFilter

rdkit.VLib.NodeLib.SmilesOutput.OutputNode

rdkit.VLib.NodeLib.SmilesSupply.SmilesSupplyNode

rdkit.VLib.Output.OutputNode

rdkit.VLib.Supply.SupplyNode

rdkit.VLib.Transform.TransformNode
rdkit.rdBase._listSt6vectorIiSaIiEE
rdkit.rdBase._listi
rdkit.rdBase._vectSs
rdkit.rdBase._vectSt6vectorIdSaIdEE
rdkit.rdBase._vectSt6vectorIiSaIiEE
rdkit.rdBase._vectSt6vectorIjSaIjEE
rdkit.rdBase._vectd
rdkit.rdBase._vecti
rdkit.rdBase._vectj

All Functions

rdkit.Chem.AllChem._test

rdkit.Chem.AssignAtomChiralTagsFromStructure
rdkit.Chem.AssignStereochemistry
rdkit.Chem.AtomPairs.Pairs.ExplainPairScore
rdkit.Chem.AtomPairs.Pairs.GetAtomPairFingerprintAsBitVect

rdkit.Chem.AtomPairs.Pairs._test

rdkit.Chem.AtomPairs.Pairs.pyScorePair
rdkit.Chem.AtomPairs.Torsions.ExplainPathScore
rdkit.Chem.AtomPairs.Torsions.GetTopologicalTorsionFingerprintAsIds

rdkit.Chem.AtomPairs.Torsions._test

rdkit.Chem.AtomPairs.Torsions.pyScorePath
rdkit.Chem.AtomPairs.Utils.BitsInCommon
rdkit.Chem.AtomPairs.Utils.CosineSimilarity
rdkit.Chem.AtomPairs.Utils.DiceSimilarity
rdkit.Chem.AtomPairs.Utils.Dot
rdkit.Chem.AtomPairs.Utils.ExplainAtomCode
rdkit.Chem.AtomPairs.Utils.NumPiElectrons

rdkit.Chem.AtomPairs.Utils._test

rdkit.Chem.AvailDescriptors.Desensitize
rdkit.Chem.BRICS.BRICSBuild
rdkit.Chem.BRICS.BRICSDecompose
rdkit.Chem.BRICS.BreakBRICSBonds
rdkit.Chem.BRICS.FindBRICSBonds

rdkit.Chem.BRICS._test

rdkit.Chem.ChemUtils.TemplateExpand._exploder

rdkit.Chem.ChemicalFeatures.BuildFeatureFactory
rdkit.Chem.ChemicalFeatures.BuildFeatureFactoryFromString
rdkit.Chem.ChemicalFeatures.GetAtomMatch
rdkit.Chem.ChemicalFeatures.MCFF_GetFeaturesForMol
rdkit.Chem.ChemicalForceFields.UFFGetMoleculeForceField
rdkit.Chem.ChemicalForceFields.UFFHasAllMoleculeParams
rdkit.Chem.ChemicalForceFields.UFFOptimizeMolecule
rdkit.Chem.Crippen.MolLogP
rdkit.Chem.Crippen.MolMR

rdkit.Chem.Crippen._Init

rdkit.Chem.Crippen._ReadPatts

rdkit.Chem.Crippen._pyGetAtomContribs

rdkit.Chem.Crippen.pyMolLogP
rdkit.Chem.Crippen.pyMolMR
rdkit.Chem.DeleteSubstructs
rdkit.Chem.Descriptors.HeavyAtomMolWt
rdkit.Chem.Descriptors.MolWt
rdkit.Chem.Descriptors.NumValenceElectrons

rdkit.Chem.Descriptors._test

rdkit.Chem.Descriptors.pyMolWt
rdkit.Chem.Draw.DrawUtils.Init
rdkit.Chem.Draw.DrawUtils.MolsToJpeg
rdkit.Chem.Draw.DrawUtils.SmilesToJpeg
rdkit.Chem.Draw.MolDrawing.registerCanvas
rdkit.Chem.Draw.MolToFile
rdkit.Chem.Draw.MolToImage
rdkit.Chem.Draw.MolToImageFile
rdkit.Chem.Draw.ShowMol

rdkit.Chem.Draw.aggCanvas._doLine

rdkit.Chem.Draw.aggCanvas._getLinePoints

rdkit.Chem.Draw.aggCanvas.addCanvasDashedWedge
rdkit.Chem.Draw.aggCanvas.addCanvasLine
rdkit.Chem.Draw.aggCanvas.addCanvasPolygon
rdkit.Chem.Draw.aggCanvas.addCanvasText
rdkit.Chem.Draw.aggCanvas.convertColor

rdkit.Chem.Draw.cairoCanvas._doLine

rdkit.Chem.Draw.cairoCanvas._getLinePoints

rdkit.Chem.Draw.cairoCanvas.addCanvasDashedWedge
rdkit.Chem.Draw.cairoCanvas.addCanvasLine
rdkit.Chem.Draw.cairoCanvas.addCanvasPolygon
rdkit.Chem.Draw.cairoCanvas.addCanvasText
rdkit.Chem.Draw.cairoCanvas.convertColor
rdkit.Chem.Draw.mplCanvas.addCanvasLine
rdkit.Chem.Draw.mplCanvas.addCanvasPolygon
rdkit.Chem.Draw.mplCanvas.addCanvasText

rdkit.Chem.Draw.spingCanvas._getLinePoints

rdkit.Chem.EState.EState_VSA._InstallDescriptors

rdkit.Chem.EState.Fingerprinter.FingerprintMol
rdkit.Chem.FeatFinderCLI.GetAtomFeatInfo

rdkit.Chem.FeatMaps.FeatMapParser._test

rdkit.Chem.FeatMaps.FeatMapPoint._test

rdkit.Chem.FeatMaps.FeatMapUtils.CombineFeatMaps
rdkit.Chem.FeatMaps.FeatMapUtils.GetFeatFeatDistMatrix
rdkit.Chem.FeatMaps.FeatMapUtils.MergeFeatPoints

rdkit.Chem.FeatMaps.FeatMapUtils.__copyAll

rdkit.Chem.FeatMaps.FeatMapUtils._test

rdkit.Chem.FeatMaps.FeatMapUtils.familiesMatch
rdkit.Chem.FeatMaps.FeatMapUtils.feq

rdkit.Chem.FeatMaps.FeatMaps._test

rdkit.Chem.Features.FeatDirUtilsRD.ArbAxisRotation
rdkit.Chem.Features.FeatDirUtilsRD.GetAcceptor1FeatVects
rdkit.Chem.Features.FeatDirUtilsRD.GetAcceptor2FeatVects
rdkit.Chem.Features.FeatDirUtilsRD.GetAcceptor3FeatVects
rdkit.Chem.Features.FeatDirUtilsRD.GetAromaticFeatVects
rdkit.Chem.Features.FeatDirUtilsRD.GetDonor1FeatVects
rdkit.Chem.Features.FeatDirUtilsRD.GetDonor2FeatVects
rdkit.Chem.Features.FeatDirUtilsRD.GetDonor3FeatVects

rdkit.Chem.Features.FeatDirUtilsRD._GetTetrahedralFeatVect

rdkit.Chem.Features.FeatDirUtilsRD._checkPlanarity

rdkit.Chem.Features.FeatDirUtilsRD._findAvgVec

rdkit.Chem.Features.FeatDirUtilsRD._findHydAtoms

rdkit.Chem.Features.FeatDirUtilsRD.cross
rdkit.Chem.Features.FeatDirUtilsRD.findNeighbors
rdkit.Chem.Features.ShowFeats.ShowArrow
rdkit.Chem.Features.ShowFeats.ShowMolFeats

rdkit.Chem.Features.ShowFeats._buildCanonArrowhead

rdkit.Chem.Features.ShowFeats._cgoArrowhead

rdkit.Chem.Features.ShowFeats._getVectNormal

rdkit.Chem.FindAllPathsOfLengthN
rdkit.Chem.FindAllSubgraphsOfLengthN
rdkit.Chem.FindMolChiralCenters
rdkit.Chem.FindUniqueSubgraphsOfLengthN
rdkit.Chem.Fingerprints.ClusterMols.ClusterFromDetails
rdkit.Chem.Fingerprints.ClusterMols.ClusterPoints
rdkit.Chem.Fingerprints.ClusterMols.GetDistanceMatrix

rdkit.Chem.Fingerprints.DbFpSupplier._test

rdkit.Chem.Fingerprints.MolSimilarity._ConstructSQL

rdkit.Chem.FragmentCatalog.BuildAdjacencyList
rdkit.Chem.FragmentCatalog.GetMolsMatchingBit
rdkit.Chem.FragmentCatalog.ProcessGainsFile
rdkit.Chem.FragmentCatalog.ShowMolsMatchingBit
rdkit.Chem.FragmentCatalog.message

rdkit.Chem.FragmentMatcher._test

rdkit.Chem.Fragments._CountMatches

rdkit.Chem.Fragments._LoadPatterns

rdkit.Chem.GraphDescriptors._AssignSymmetryClasses

rdkit.Chem.GraphDescriptors._CalculateEntropies

rdkit.Chem.GraphDescriptors._CreateBondDictEtc

rdkit.Chem.GraphDescriptors._GetCountDict

rdkit.Chem.GraphDescriptors._LookUpBondOrder

rdkit.Chem.GraphDescriptors._NumAdjacencies

rdkit.Chem.GraphDescriptors._VertexDegrees

rdkit.Chem.GraphDescriptors._hkDeltas

rdkit.Chem.GraphDescriptors._log2

rdkit.Chem.GraphDescriptors._nVal

rdkit.Chem.Graphs.CharacteristicPolynomial
rdkit.Chem.Kekulize
rdkit.Chem.LayeredFingerprint
rdkit.Chem.Lipinski.HeavyAtomCount
rdkit.Chem.Lipinski.NHOHCount
rdkit.Chem.Lipinski.NOCount
rdkit.Chem.Lipinski.NumHAcceptors
rdkit.Chem.Lipinski.NumHDonors
rdkit.Chem.Lipinski.NumHeteroatoms
rdkit.Chem.Lipinski.NumRotatableBonds
rdkit.Chem.Lipinski.RingCount

rdkit.Chem.Lipinski._HAcceptors

rdkit.Chem.Lipinski._HDonors

rdkit.Chem.Lipinski._Heteroatoms

rdkit.Chem.Lipinski._NumMatches

rdkit.Chem.Lipinski._RotatableBonds

rdkit.Chem.MACCSkeys.GenMACCSKeys

rdkit.Chem.MACCSkeys._InitKeys

rdkit.Chem.MACCSkeys._test

rdkit.Chem.MolSurf._InstallDescriptors

rdkit.Chem.MolSurf._LabuteHelper

rdkit.Chem.MolSurf._TPSAContribs

rdkit.Chem.MolSurf._pyLabuteHelper

rdkit.Chem.MolSurf.pyLabuteASA
rdkit.Chem.MolToMolBlock
rdkit.Chem.MolToSmarts
rdkit.Chem.MolToTPLFile
rdkit.Chem.Pharm2D.DefaultSigFactory
rdkit.Chem.Pharm2D.Generate.Gen2DFingerprint

rdkit.Chem.Pharm2D.Generate._ShortestPathsMatch

rdkit.Chem.Pharm2D.Gobbi_Pharm2D._init

rdkit.Chem.Pharm2D.Utils._fact

rdkit.Chem.Pharm2D.Utils._test

rdkit.Chem.Pharm3D.EmbedLib._checkMatch

rdkit.Chem.Pharm3D.EmbedLib._getFeatDict

rdkit.Chem.Pharm3D.EmbedLib._test

rdkit.Chem.Pharm3D.EmbedLib.isNaN

rdkit.Chem.PropertyMol._test

rdkit.Chem.Subshape.SubshapeAligner._getAllTriangles

rdkit.Chem.Subshape.SubshapeObjects.DisplaySubshape
rdkit.Chem.Subshape.SubshapeObjects.DisplaySubshapeSkeleton

rdkit.Chem.Subshape.SubshapeObjects._displaySubshapeSkelPt

rdkit.Chem.SupplierFromFilename
rdkit.Chem.Suppliers.DbMolSupplier.warning
rdkit.Chem.TemplateAlign.AlignMolToTemplate2D

rdkit.Chem.TemplateAlign._test

rdkit.Chem.rdMolDescriptors._CalcCrippenContribs

rdkit.Chem.rdMolDescriptors._CalcLabuteASAContribs

rdkit.Chem.rdMolDescriptors._CalcMolWt

rdkit.Chem.rdMolTransforms.CanonicalizeConformer
rdkit.Chem.rdMolTransforms.CanonicalizeMol
rdkit.Chem.rdMolTransforms.ComputeCanonicalTransform
rdkit.Chem.rdMolTransforms.ComputeCentroid
rdkit.Chem.rdMolTransforms.TransformConformer
rdkit.Chem.rdPartialCharges.ComputeGasteigerCharges
rdkit.Chem.rdSLNParse.MolFromQuerySLN
rdkit.Chem.rdSLNParse.MolFromSLN
rdkit.Chem.rdShapeHelpers.ComputeConfBox
rdkit.Chem.rdShapeHelpers.ComputeConfDimsAndOffset
rdkit.Chem.rdShapeHelpers.ComputeUnionBox
rdkit.Chem.rdShapeHelpers.EncodeShape
rdkit.Chem.rdShapeHelpers.ShapeProtrudeDist
rdkit.Chem.rdShapeHelpers.ShapeTanimotoDist
rdkit.Chem.rdchem.GetPeriodicTable

rdkit.Chem.rdchem._HasSubstructMatchStr

rdkit.DataStructs.BitEnsembleDb._InitScoreTable

rdkit.DataStructs.BitEnsembleDb._ScoreToDb

rdkit.DataStructs.BitUtils.ConstructEnsembleBV

rdkit.DataStructs.BitUtils._test

rdkit.DataStructs.BulkAsymmetricSimilarity
rdkit.DataStructs.BulkCosineSimilarity
rdkit.DataStructs.BulkSokalSimilarity
rdkit.DataStructs.ComputeL1Norm
rdkit.DataStructs.ConvertToExplicit
rdkit.DataStructs.CosineSimilarity
rdkit.DataStructs.CreateFromBitString
rdkit.DataStructs.FingerprintSimilarity
rdkit.DataStructs.FoldToTargetDensity
rdkit.DataStructs.HierarchyVis.DrawHierarchy
rdkit.DataStructs.HierarchyVis.GetMinCanvasSize
rdkit.DataStructs.InitFromDaylightString
rdkit.DataStructs.KulczynskiSimilarity

rdkit.DataStructs.LazySignature._test

rdkit.DataStructs.SparseIntVect.DotProduct

rdkit.DataStructs.SparseIntVect._test

rdkit.DataStructs.SparseIntVect.pyDiceSimilarity
rdkit.DataStructs.TanimotoSimilarity
rdkit.DataStructs.TverskySimilarity

rdkit.DataStructs.VectCollection._test

rdkit.Dbase.DbUtils._AddDataToDb

rdkit.Dbase.DbUtils._AdjustColHeadings

rdkit.Dbase.DbUtils._insertBlock

rdkit.Dbase.DbUtils._take

rdkit.Dbase.Pubmed.PubmedUtils.FillParagraph
rdkit.Dbase.Pubmed.PubmedUtils.GetSearchURL
rdkit.Dbase.Pubmed.PubmedUtils.RecordsToPubmedText

rdkit.Dbase.Pubmed.PubmedUtils._test

rdkit.Dbase.Pubmed.QueryParams.details
rdkit.Dbase.Pubmed.Searches.CheckForLinks
rdkit.Dbase.Pubmed.Searches.GetLinks
rdkit.Dbase.Pubmed.Searches.GetNumHits
rdkit.Dbase.Pubmed.Searches.GetRecords
rdkit.Dbase.Pubmed.Searches.GetSearchIds
rdkit.Dbase.Pubmed.Searches.GetSummaries

rdkit.Dbase.Pubmed.Searches._test

rdkit.Dbase.Pubmed.Searches.openURL
rdkit.Dbase.StorageUtils.GetNextId
rdkit.Dbase.StorageUtils.GetNextRDId
rdkit.Dbase.StorageUtils.IndexToRDId
rdkit.Dbase.StorageUtils.RDIdToInt
rdkit.Dbase.StorageUtils.RegisterItem
rdkit.Dbase.StorageUtils.RegisterItems
rdkit.Dbase.StorageUtils.ValidateRDId

rdkit.Dbase.StorageUtils._test

rdkit.ML.Cluster.ClusterUtils._BreadthFirstSplit

rdkit.ML.Cluster.ClusterUtils._HeightFirstSplit

rdkit.ML.Cluster.ClusterUtils._sortHelper

rdkit.ML.Cluster.ClusterVis.ClusterToImg
rdkit.ML.Cluster.ClusterVis.ClusterToPDF
rdkit.ML.Cluster.ClusterVis.ClusterToSVG
rdkit.ML.Cluster.ClusterVis.DrawClusterTree

rdkit.ML.Cluster.ClusterVis._DrawClusterTree

rdkit.ML.Cluster.ClusterVis._scaleMetric

rdkit.ML.Cluster.Clustering.MurtaghCluster
rdkit.ML.Cluster.Clustering.MurtaghDistCluster
rdkit.ML.Cluster.Murtagh.ClusterData

rdkit.ML.Cluster.Murtagh._LookupDist

rdkit.ML.Cluster.Murtagh._ToClusters

rdkit.ML.Data.DataUtils._test

rdkit.ML.Data.DataUtils.permutation
rdkit.ML.Data.FindQuantBounds.Usage
rdkit.ML.Data.FindQuantBounds.runIt
rdkit.ML.Data.Quantize.FindVarMultQuantBounds
rdkit.ML.Data.Quantize.FindVarQuantBound

rdkit.ML.Data.Quantize._GenVarTable

rdkit.ML.Data.Quantize._NewPyFindStartPoints

rdkit.ML.Data.Quantize._NewPyRecurseOnBounds

rdkit.ML.Data.Quantize._PyRecurseOnBounds

rdkit.ML.Data.Quantize.feq
rdkit.ML.Data.SplitData.SplitDataSet
rdkit.ML.Data.SplitData.SplitDbData
rdkit.ML.Data.SplitData.SplitIndices

rdkit.ML.Data.SplitData._test

rdkit.ML.Data.Stats.FormCorrelationMatrix
rdkit.ML.Data.Stats.FormCovarianceMatrix
rdkit.ML.Data.Stats.GetConfidenceInterval
rdkit.ML.Data.Stats.MeanAndDev
rdkit.ML.Data.Stats.PrincipalComponents
rdkit.ML.Data.Stats.R2
rdkit.ML.Data.Stats.StandardizeMatrix
rdkit.ML.Data.Stats.TransformPoints
rdkit.ML.Data.Transforms.GetAvailTransforms

rdkit.ML.Data.Transforms._CenterTForm

rdkit.ML.Data.Transforms._NormalizeTForm

rdkit.ML.Data.Transforms._StandardTForm

rdkit.ML.Data.cQuantize._FindStartPoints

rdkit.ML.DecTree.BuildQuantTree.BuildQuantTree
rdkit.ML.DecTree.BuildQuantTree.FindBest
rdkit.ML.DecTree.BuildQuantTree.QuantTreeBoot
rdkit.ML.DecTree.BuildQuantTree.TestQuantTree
rdkit.ML.DecTree.BuildQuantTree.TestQuantTree2
rdkit.ML.DecTree.BuildQuantTree.TestTree
rdkit.ML.DecTree.BuildSigTree.BuildSigTree
rdkit.ML.DecTree.BuildSigTree.SigTreeBuilder

rdkit.ML.DecTree.BuildSigTree._GenerateRandomEnsemble

rdkit.ML.DecTree.CrossValidate.ChooseOptimalRoot
rdkit.ML.DecTree.CrossValidate.CrossValidate
rdkit.ML.DecTree.CrossValidate.CrossValidationDriver
rdkit.ML.DecTree.CrossValidate.TestRun
rdkit.ML.DecTree.ID3.CalcTotalEntropy
rdkit.ML.DecTree.ID3.GenVarTable
rdkit.ML.DecTree.ID3.ID3
rdkit.ML.DecTree.ID3.ID3Boot
rdkit.ML.DecTree.PruneTree.MaxCount
rdkit.ML.DecTree.PruneTree.PruneTree

rdkit.ML.DecTree.PruneTree._GetLocalError

rdkit.ML.DecTree.PruneTree._Pruner

rdkit.ML.DecTree.PruneTree._testChain

rdkit.ML.DecTree.PruneTree._testRandom

rdkit.ML.DecTree.PruneTree._testSpecific

rdkit.ML.DecTree.TreeUtils.CollectDescriptorNames
rdkit.ML.DecTree.TreeUtils.CollectLabelLevels

rdkit.ML.DecTree.TreeUtils._test

rdkit.ML.DecTree.TreeVis.CalcTreeNodeSizes
rdkit.ML.DecTree.TreeVis.CalcTreeWidth
rdkit.ML.DecTree.TreeVis.DrawTree
rdkit.ML.DecTree.TreeVis.DrawTreeNode
rdkit.ML.DecTree.TreeVis.ResetTree
rdkit.ML.DecTree.TreeVis.SetNodeScales

rdkit.ML.DecTree.TreeVis._ApplyNodeScales

rdkit.ML.DecTree.TreeVis._ExampleCounter

rdkit.ML.DecTree.TreeVis._simpleTest

rdkit.ML.Descriptors.CompoundDescriptors.GetAllDescriptorNames
rdkit.ML.Descriptors.Parser.CalcMultipleCompoundsDescriptor
rdkit.ML.Descriptors.Parser.CalcSingleCompoundDescriptor
rdkit.ML.Descriptors.Parser.DEV
rdkit.ML.Descriptors.Parser.HAS
rdkit.ML.Descriptors.Parser.MAX
rdkit.ML.Descriptors.Parser.MEAN
rdkit.ML.Descriptors.Parser.MIN
rdkit.ML.Descriptors.Parser.SUM

rdkit.ML.Descriptors.Parser._SubForAtomicVars

rdkit.ML.Descriptors.Parser._SubForCompoundDescriptors

rdkit.ML.Descriptors.Parser._SubMethodArgs

rdkit.ML.EnrichPlot.AccumulateCounts
rdkit.ML.EnrichPlot.MakePlot
rdkit.ML.EnrichPlot.ScreenModel
rdkit.ML.EnrichPlot.Usage
rdkit.ML.EnrichPlot.error
rdkit.ML.EnrichPlot.message
rdkit.ML.FeatureSelect.CMIM.SelectFeatures

rdkit.ML.FeatureSelect.CMIM._SelectFeatures

rdkit.ML.KNN.DistFunctions._test

rdkit.ML.MLUtils.VoteImg.BuildVoteImage
rdkit.ML.MLUtils.VoteImg.CollectVotes
rdkit.ML.MLUtils.VoteImg.Usage
rdkit.ML.MLUtils.VoteImg.VoteAndBuildImage
rdkit.ML.ModelPackage.PackageUtils.PackageToXml

rdkit.ML.ModelPackage.PackageUtils._ConvertModelPerformance

rdkit.ML.NaiveBayes.ClassificationModel._getBinId

rdkit.ML.ScreenComposite._processVoteList

rdkit.ML.ScreenComposite.error
rdkit.ML.ScreenComposite.message
rdkit.ML.files.ReadDataFile
rdkit.Numerics.rdAlignment.GetAlignmentTransform

rdkit.SimDivFilters.SimilarityPickers._test

rdkit.VLib.Filter._test

rdkit.VLib.Node._test

rdkit.VLib.NodeLib.DbMolSupply.GetNode

rdkit.VLib.NodeLib.DbMolSupply._test

rdkit.VLib.NodeLib.DbPickleSupplier.GetNode

rdkit.VLib.NodeLib.DbPickleSupplier._test

rdkit.VLib.NodeLib.SDSupply._test

rdkit.VLib.NodeLib.SmartsMolFilter._test

rdkit.VLib.NodeLib.SmartsRemover._test

rdkit.VLib.NodeLib.SmilesDupeFilter._test

rdkit.VLib.NodeLib.SmilesOutput._test

rdkit.VLib.NodeLib.SmilesSupply._test

rdkit.VLib.Output._test

rdkit.VLib.Supply._test

rdkit.VLib.Transform._test

rdkit.rdBase'._version

All Variables

RDConfig.RDBaseDir
RDConfig.RDBinDir
RDConfig.RDCodeDir
RDConfig.RDDataDatabase
RDConfig.RDDataDir
RDConfig.RDDemoDir
RDConfig.RDDocsDir
RDConfig.RDProjDir
RDConfig.RDTestDatabase
RDConfig.__package__
RDConfig.defaultDBPassword
RDConfig.defaultDBUser
RDConfig.molViewer
RDConfig.pythonExe
RDConfig.pythonTestCommand
RDConfig.rpcTestPort
RDConfig.usePgSQL
RDConfig.useSqlLite
RDLogger.CRITICAL
RDLogger.DEBUG
RDLogger.ERROR
RDLogger.INFO
RDLogger.WARNING
RDLogger.__package__

RDLogger._levels

RDRandom.__package__

RDRandom._randGen

rdkit.Chem.AllChem.__package__
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