RDKit
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Public Types | Public Member Functions | List of all members
RDKit::SparseIntVect< IndexType > Class Template Reference

a class for efficiently storing sparse vectors of ints More...

#include <SparseIntVect.h>

Public Types

typedef std::map< IndexType, int > StorageType
 

Public Member Functions

 SparseIntVect ()
 
 SparseIntVect (IndexType length)
 initialize with a particular length
 
 SparseIntVect (const SparseIntVect< IndexType > &other)
 Copy constructor.
 
 SparseIntVect (const std::string &pkl)
 constructor from a pickle
 
 SparseIntVect (const char *pkl, const unsigned int len)
 constructor from a pickle
 
SparseIntVect & operator= (const SparseIntVect< IndexType > &other)
 
 ~SparseIntVect ()=default
 destructor (doesn't need to do anything)
 
int getVal (IndexType idx) const
 return the value at an index
 
void setVal (IndexType idx, int val)
 set the value at an index
 
int operator[] (IndexType idx) const
 support indexing using []
 
IndexType getLength () const
 returns the length
 
int getTotalVal (bool doAbs=false) const
 
unsigned int size () const
 returns the length
 
const StorageType & getNonzeroElements () const
 returns our nonzero elements as a map(IndexType->int)
 
SparseIntVect< IndexType > & operator&= (const SparseIntVect< IndexType > &other)
 
const SparseIntVect< IndexType > operator& (const SparseIntVect< IndexType > &other) const
 
SparseIntVect< IndexType > & operator|= (const SparseIntVect< IndexType > &other)
 
const SparseIntVect< IndexType > operator| (const SparseIntVect< IndexType > &other) const
 
SparseIntVect< IndexType > & operator+= (const SparseIntVect< IndexType > &other)
 
const SparseIntVect< IndexType > operator+ (const SparseIntVect< IndexType > &other) const
 
SparseIntVect< IndexType > & operator-= (const SparseIntVect< IndexType > &other)
 
const SparseIntVect< IndexType > operator- (const SparseIntVect< IndexType > &other) const
 
SparseIntVect< IndexType > & operator*= (int v)
 
SparseIntVect< IndexType > & operator* (int v)
 
SparseIntVect< IndexType > & operator/= (int v)
 
SparseIntVect< IndexType > & operator/ (int v)
 
SparseIntVect< IndexType > & operator+= (int v)
 
SparseIntVect< IndexType > & operator+ (int v)
 
SparseIntVect< IndexType > & operator-= (int v)
 
SparseIntVect< IndexType > & operator- (int v)
 
bool operator== (const SparseIntVect< IndexType > &v2) const
 
bool operator!= (const SparseIntVect< IndexType > &v2) const
 
std::string toString () const
 returns a binary string representation (pickle)
 
void fromString (const std::string &txt)
 

Detailed Description

template<typename IndexType>
class RDKit::SparseIntVect< IndexType >

a class for efficiently storing sparse vectors of ints

Definition at line 28 of file SparseIntVect.h.

Member Typedef Documentation

◆ StorageType

template<typename IndexType >
typedef std::map<IndexType, int> RDKit::SparseIntVect< IndexType >::StorageType

Definition at line 30 of file SparseIntVect.h.

Constructor & Destructor Documentation

◆ SparseIntVect() [1/5]

template<typename IndexType >
RDKit::SparseIntVect< IndexType >::SparseIntVect ( )
inline

Definition at line 32 of file SparseIntVect.h.

◆ SparseIntVect() [2/5]

template<typename IndexType >
RDKit::SparseIntVect< IndexType >::SparseIntVect ( IndexType length)
inline

initialize with a particular length

Definition at line 35 of file SparseIntVect.h.

◆ SparseIntVect() [3/5]

template<typename IndexType >
RDKit::SparseIntVect< IndexType >::SparseIntVect ( const SparseIntVect< IndexType > & other)
inline

Copy constructor.

Definition at line 38 of file SparseIntVect.h.

References RDKit::rdvalue_is().

◆ SparseIntVect() [4/5]

template<typename IndexType >
RDKit::SparseIntVect< IndexType >::SparseIntVect ( const std::string & pkl)
inline

constructor from a pickle

Definition at line 45 of file SparseIntVect.h.

References RDKit::rdvalue_is().

◆ SparseIntVect() [5/5]

template<typename IndexType >
RDKit::SparseIntVect< IndexType >::SparseIntVect ( const char * pkl,
const unsigned int len )
inline

constructor from a pickle

Definition at line 49 of file SparseIntVect.h.

References RDKit::rdvalue_is().

◆ ~SparseIntVect()

template<typename IndexType >
RDKit::SparseIntVect< IndexType >::~SparseIntVect ( )
default

destructor (doesn't need to do anything)

Member Function Documentation

◆ fromString()

template<typename IndexType >
void RDKit::SparseIntVect< IndexType >::fromString ( const std::string & txt)
inline

Definition at line 358 of file SparseIntVect.h.

References RDKit::rdvalue_is().

◆ getLength()

template<typename IndexType >
IndexType RDKit::SparseIntVect< IndexType >::getLength ( ) const
inline

returns the length

Definition at line 110 of file SparseIntVect.h.

Referenced by RDKit::DiceSimilarity(), RDKit::SparseIntVect< IndexType >::size(), and RDKit::TverskySimilarity().

◆ getNonzeroElements()

template<typename IndexType >
const StorageType & RDKit::SparseIntVect< IndexType >::getNonzeroElements ( ) const
inline

returns our nonzero elements as a map(IndexType->int)

Definition at line 130 of file SparseIntVect.h.

◆ getTotalVal()

template<typename IndexType >
int RDKit::SparseIntVect< IndexType >::getTotalVal ( bool doAbs = false) const
inline

returns the sum of all the elements in the vect the doAbs argument toggles summing the absolute values of the elements

Definition at line 114 of file SparseIntVect.h.

References RDKit::rdvalue_is().

Referenced by RDKit::DiceSimilarity().

◆ getVal()

template<typename IndexType >
int RDKit::SparseIntVect< IndexType >::getVal ( IndexType idx) const
inline

return the value at an index

Definition at line 77 of file SparseIntVect.h.

References RDKit::rdvalue_is().

Referenced by RDKit::SparseIntVect< IndexType >::operator[]().

◆ operator!=()

template<typename IndexType >
bool RDKit::SparseIntVect< IndexType >::operator!= ( const SparseIntVect< IndexType > & v2) const
inline

Definition at line 331 of file SparseIntVect.h.

◆ operator&()

template<typename IndexType >
const SparseIntVect< IndexType > RDKit::SparseIntVect< IndexType >::operator& ( const SparseIntVect< IndexType > & other) const
inline

Definition at line 165 of file SparseIntVect.h.

References RDKit::rdvalue_is().

◆ operator&=()

template<typename IndexType >
SparseIntVect< IndexType > & RDKit::SparseIntVect< IndexType >::operator&= ( const SparseIntVect< IndexType > & other)
inline

this is a "fuzzy" intesection, the final value of each element is equal to the minimum from the two vects.

Definition at line 135 of file SparseIntVect.h.

References RDKit::rdvalue_is().

◆ operator*()

template<typename IndexType >
SparseIntVect< IndexType > & RDKit::SparseIntVect< IndexType >::operator* ( int v)
inline

Definition at line 284 of file SparseIntVect.h.

References RDKit::rdvalue_is().

◆ operator*=()

template<typename IndexType >
SparseIntVect< IndexType > & RDKit::SparseIntVect< IndexType >::operator*= ( int v)
inline

Definition at line 276 of file SparseIntVect.h.

References RDKit::rdvalue_is().

◆ operator+() [1/2]

template<typename IndexType >
const SparseIntVect< IndexType > RDKit::SparseIntVect< IndexType >::operator+ ( const SparseIntVect< IndexType > & other) const
inline

Definition at line 237 of file SparseIntVect.h.

References RDKit::rdvalue_is().

◆ operator+() [2/2]

template<typename IndexType >
SparseIntVect< IndexType > & RDKit::SparseIntVect< IndexType >::operator+ ( int v)
inline

Definition at line 308 of file SparseIntVect.h.

References RDKit::rdvalue_is().

◆ operator+=() [1/2]

template<typename IndexType >
SparseIntVect< IndexType > & RDKit::SparseIntVect< IndexType >::operator+= ( const SparseIntVect< IndexType > & other)
inline

Definition at line 209 of file SparseIntVect.h.

References RDKit::rdvalue_is().

◆ operator+=() [2/2]

template<typename IndexType >
SparseIntVect< IndexType > & RDKit::SparseIntVect< IndexType >::operator+= ( int v)
inline

Definition at line 300 of file SparseIntVect.h.

References RDKit::rdvalue_is().

◆ operator-() [1/2]

template<typename IndexType >
const SparseIntVect< IndexType > RDKit::SparseIntVect< IndexType >::operator- ( const SparseIntVect< IndexType > & other) const
inline

Definition at line 271 of file SparseIntVect.h.

References RDKit::rdvalue_is().

◆ operator-() [2/2]

template<typename IndexType >
SparseIntVect< IndexType > & RDKit::SparseIntVect< IndexType >::operator- ( int v)
inline

Definition at line 320 of file SparseIntVect.h.

References RDKit::rdvalue_is().

◆ operator-=() [1/2]

template<typename IndexType >
SparseIntVect< IndexType > & RDKit::SparseIntVect< IndexType >::operator-= ( const SparseIntVect< IndexType > & other)
inline

Definition at line 243 of file SparseIntVect.h.

References RDKit::rdvalue_is().

◆ operator-=() [2/2]

template<typename IndexType >
SparseIntVect< IndexType > & RDKit::SparseIntVect< IndexType >::operator-= ( int v)
inline

Definition at line 312 of file SparseIntVect.h.

References RDKit::rdvalue_is().

◆ operator/()

template<typename IndexType >
SparseIntVect< IndexType > & RDKit::SparseIntVect< IndexType >::operator/ ( int v)
inline

Definition at line 296 of file SparseIntVect.h.

References RDKit::rdvalue_is().

◆ operator/=()

template<typename IndexType >
SparseIntVect< IndexType > & RDKit::SparseIntVect< IndexType >::operator/= ( int v)
inline

Definition at line 288 of file SparseIntVect.h.

References RDKit::rdvalue_is().

◆ operator=()

template<typename IndexType >
SparseIntVect & RDKit::SparseIntVect< IndexType >::operator= ( const SparseIntVect< IndexType > & other)
inline

Definition at line 53 of file SparseIntVect.h.

References RDKit::rdvalue_is().

◆ operator==()

template<typename IndexType >
bool RDKit::SparseIntVect< IndexType >::operator== ( const SparseIntVect< IndexType > & v2) const
inline

Definition at line 325 of file SparseIntVect.h.

◆ operator[]()

template<typename IndexType >
int RDKit::SparseIntVect< IndexType >::operator[] ( IndexType idx) const
inline

support indexing using []

Definition at line 107 of file SparseIntVect.h.

References RDKit::SparseIntVect< IndexType >::getVal().

◆ operator|()

template<typename IndexType >
const SparseIntVect< IndexType > RDKit::SparseIntVect< IndexType >::operator| ( const SparseIntVect< IndexType > & other) const
inline

Definition at line 203 of file SparseIntVect.h.

References RDKit::rdvalue_is().

◆ operator|=()

template<typename IndexType >
SparseIntVect< IndexType > & RDKit::SparseIntVect< IndexType >::operator|= ( const SparseIntVect< IndexType > & other)
inline

this is a "fuzzy" union, the final value of each element is equal to the maximum from the two vects.

Definition at line 174 of file SparseIntVect.h.

References RDKit::rdvalue_is().

◆ setVal()

template<typename IndexType >
void RDKit::SparseIntVect< IndexType >::setVal ( IndexType idx,
int val )
inline

set the value at an index

Definition at line 90 of file SparseIntVect.h.

References RDKit::rdvalue_is().

◆ size()

template<typename IndexType >
unsigned int RDKit::SparseIntVect< IndexType >::size ( ) const
inline

returns the length

Definition at line 127 of file SparseIntVect.h.

References RDKit::SparseIntVect< IndexType >::getLength().

◆ toString()

template<typename IndexType >
std::string RDKit::SparseIntVect< IndexType >::toString ( ) const
inline

returns a binary string representation (pickle)

Definition at line 336 of file SparseIntVect.h.

References ci_SPARSEINTVECT_VERSION, RDKit::rdvalue_is(), and RDKit::streamWrite().

The documentation for this class was generated from the following file: