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RDKit
Open-source cheminformatics and machine learning.
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the out-of-plane term for MMFF More...
#include <OopBend.h>
Public Member Functions | |
| OopBendContrib () | |
| OopBendContrib (ForceField *owner) | |
| Constructor. | |
| void | addTerm (unsigned int idx1, unsigned int idx2, unsigned int idx3, unsigned int idx4, const MMFFOop *mmffOopParams) |
| double | getEnergy (double *pos) const override |
| returns our contribution to the energy of a position | |
| void | getGrad (double *pos, double *grad) const override |
| calculates our contribution to the gradients of a position | |
| OopBendContrib * | copy () const override |
| return a copy | |
| void | getSingleGrad (double *pos, double *grad, unsigned int termIdx) const |
Public Member Functions inherited from ForceFields::ForceFieldContrib | |
| ForceFieldContrib () | |
| ForceFieldContrib (ForceFields::ForceField *owner) | |
| virtual | ~ForceFieldContrib () |
Additional Inherited Members | |
Protected Attributes inherited from ForceFields::ForceFieldContrib | |
| ForceField * | dp_forceField {nullptr} |
| our owning ForceField | |
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inline |
| ForceFields::MMFF::OopBendContrib::OopBendContrib | ( | ForceField * | owner | ) |
Constructor.
References ForceFields::ForceFieldContrib::ForceField.
| void ForceFields::MMFF::OopBendContrib::addTerm | ( | unsigned int | idx1, |
| unsigned int | idx2, | ||
| unsigned int | idx3, | ||
| unsigned int | idx4, | ||
| const MMFFOop * | mmffOopParams ) |
Adds an out-of-plane term to the force field contrib.
The Wilson angle is between the vector formed by atom2-atom4 and the angle formed by atom1-atom2-atom3
| idx1 | index of atom1 in the ForceField's positions |
| idx2 | index of atom2 in the ForceField's positions |
| idx3 | index of atom3 in the ForceField's positions |
| idx4 | index of atom4 in the ForceField's positions |
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inlineoverridevirtual |
return a copy
Implements ForceFields::ForceFieldContrib.
Definition at line 42 of file OopBend.h.
References OopBendContrib().
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overridevirtual |
returns our contribution to the energy of a position
Implements ForceFields::ForceFieldContrib.
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overridevirtual |
calculates our contribution to the gradients of a position
Implements ForceFields::ForceFieldContrib.
| void ForceFields::MMFF::OopBendContrib::getSingleGrad | ( | double * | pos, |
| double * | grad, | ||
| unsigned int | termIdx ) const |