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RDKit
Open-source cheminformatics and machine learning.
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the torsion term for MMFF More...
#include <TorsionAngle.h>
Public Member Functions | |
| TorsionAngleContrib () | |
| TorsionAngleContrib (ForceField *owner) | |
| Constructor. | |
| void | addTerm (unsigned int idx1, unsigned int idx2, unsigned int idx3, unsigned int idx4, const MMFFTor *mmffTorParams) |
| double | getEnergy (double *pos) const override |
| returns our contribution to the energy of a position | |
| void | getGrad (double *pos, double *grad) const override |
| calculates our contribution to the gradients of a position | |
| TorsionAngleContrib * | copy () const override |
| return a copy | |
Public Member Functions inherited from ForceFields::ForceFieldContrib | |
| ForceFieldContrib () | |
| ForceFieldContrib (ForceFields::ForceField *owner) | |
| virtual | ~ForceFieldContrib () |
Additional Inherited Members | |
Protected Attributes inherited from ForceFields::ForceFieldContrib | |
| ForceField * | dp_forceField {nullptr} |
| our owning ForceField | |
the torsion term for MMFF
Definition at line 28 of file MMFF/TorsionAngle.h.
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inline |
Definition at line 30 of file MMFF/TorsionAngle.h.
Referenced by copy().
| ForceFields::MMFF::TorsionAngleContrib::TorsionAngleContrib | ( | ForceField * | owner | ) |
Constructor.
References ForceFields::ForceFieldContrib::ForceField.
| void ForceFields::MMFF::TorsionAngleContrib::addTerm | ( | unsigned int | idx1, |
| unsigned int | idx2, | ||
| unsigned int | idx3, | ||
| unsigned int | idx4, | ||
| const MMFFTor * | mmffTorParams ) |
Adds a torsion term to the force field contrib.
The torsion is between atom1 - atom2 - atom3 - atom4 (i.e the angle between bond atom1-atom2 and bond atom3-atom4 while looking down bond atom2-atom3)
| idx1 | index of atom1 in the ForceField's positions |
| idx2 | index of atom2 in the ForceField's positions |
| idx3 | index of atom3 in the ForceField's positions |
| idx4 | index of atom4 in the ForceField's positions |
| torsionType | MMFF type of the torsional bond between atoms 2 and 3 |
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inlineoverridevirtual |
return a copy
Implements ForceFields::ForceFieldContrib.
Definition at line 50 of file MMFF/TorsionAngle.h.
References TorsionAngleContrib().
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overridevirtual |
returns our contribution to the energy of a position
Implements ForceFields::ForceFieldContrib.
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overridevirtual |
calculates our contribution to the gradients of a position
Implements ForceFields::ForceFieldContrib.