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RDKit
Open-source cheminformatics and machine learning.
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The angle-bend term for the Universal Force Field. More...
#include <AngleBend.h>
Public Member Functions | |
| AngleBendContrib () | |
| AngleBendContrib (ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double bondOrder12, double bondOrder23, const AtomicParams *at1Params, const AtomicParams *at2Params, const AtomicParams *at3Params, unsigned int order=0) | |
| Constructor. | |
| double | getEnergy (double *pos) const override |
| returns our contribution to the energy of a position | |
| void | getGrad (double *pos, double *grad) const override |
| calculates our contribution to the gradients of a position | |
| AngleBendContrib * | copy () const override |
| return a copy | |
Public Member Functions inherited from ForceFields::ForceFieldContrib | |
| ForceFieldContrib () | |
| ForceFieldContrib (ForceFields::ForceField *owner) | |
| virtual | ~ForceFieldContrib () |
Additional Inherited Members | |
Protected Attributes inherited from ForceFields::ForceFieldContrib | |
| ForceField * | dp_forceField {nullptr} |
| our owning ForceField | |
The angle-bend term for the Universal Force Field.
Definition at line 22 of file UFF/AngleBend.h.
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inline |
Definition at line 24 of file UFF/AngleBend.h.
Referenced by copy().
| ForceFields::UFF::AngleBendContrib::AngleBendContrib | ( | ForceField * | owner, |
| unsigned int | idx1, | ||
| unsigned int | idx2, | ||
| unsigned int | idx3, | ||
| double | bondOrder12, | ||
| double | bondOrder23, | ||
| const AtomicParams * | at1Params, | ||
| const AtomicParams * | at2Params, | ||
| const AtomicParams * | at3Params, | ||
| unsigned int | order = 0 ) |
Constructor.
The angle is between atom1 - atom2 - atom3
| owner | pointer to the owning ForceField |
| idx1 | index of atom1 in the ForceField's positions |
| idx2 | index of atom2 in the ForceField's positions |
| idx3 | index of atom3 in the ForceField's positions |
| bondOrder12 | order of the bond between atoms 1 and 2 (as a double) |
| bondOrder23 | order of the bond between atoms 2 and 3 (as a double) |
| at1Params | pointer to the parameters for atom 1 |
| at2Params | pointer to the parameters for atom 2 |
| at3Params | pointer to the parameters for atom 3 |
| order | (optional) the order of the angle term, this is for special cases and should adopt values:
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References ForceFields::ForceFieldContrib::ForceField.
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inlineoverridevirtual |
return a copy
Implements ForceFields::ForceFieldContrib.
Definition at line 53 of file UFF/AngleBend.h.
References AngleBendContrib().
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overridevirtual |
returns our contribution to the energy of a position
Implements ForceFields::ForceFieldContrib.
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overridevirtual |
calculates our contribution to the gradients of a position
Implements ForceFields::ForceFieldContrib.